Report Pedigree Checks

library(qpdt)

Disclaimer

Preparatory work for creating reports based on checks of pedigrees is described.

Goal

Provide a tool that allows for a seamless creation of a report that includes all checks and diagnosis for a given pedigree.

Implementation

The report is generated based on a parametrized Rmarkdown document that can be rendered into different output formats. At a later stage alternative approaches such as providing the pedigree checks in a ShinyApp might be released.

Checks

The checks that are included into the report are determined by the available features in the R-package qpdt. The checks can be grouped into two classes.

1. simple checks involving the verification of general properties of a pedigree
2. extended checks which might require some inputs from the user to adapt the check to the specific pedigree to be checked.