Checking Datatypes of Columns of a Pedigree

Source: R/check_pedigree_datatypes.R

The datatypes given in pl_dtype$dtp are compared to the actual datatypes in the pedigree for the columns given in pl_dtype$col. If the datatypes do not match, then the records causing the problems are returned in the result list as a tibble.

check_pedigree_datatypes(
  ps_pedig_path,
  ps_delim = "|",
  ps_id_col = "#IDTier",
  pl_dtype = NULL,
  pcol_types = NULL,
  ptbl_pedigree = NULL
)

Arguments

ps_pedig_path

path to the pedigree input file
ps_delim

column delimiting character
ps_id_col

column title for animal IDs
pl_dtype

list of column names with required data-types
pcol_types

column types of pedigree in ps_pedig_path used by read_prp_pedigree
ptbl_pedigree

tibble containing pedigree information

Value

list with datatype problems

Details

The format of the argument pl_dtype can be determined from the result of the function get_pedigree_datatypes().

Examples

if (FALSE) {
check_pedigree_datatypes(ps_pedig_path = system.file('extdata',
    'PopReport_SN_ohne_20210115.csv_adaptfin2.csv',
  package = 'qprppedigree'))
}