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Summary of EBV Validation Results

summary_lrm.Rd

The list with the validation results is printed in a summary format.

Usage

summary_lrm(object, pn_digits = max(3L, getOption("digits") - 3L))

Arguments

object

validation result

pn_digits

number of digits to be used for rounding the results

Examples

tbl_ebv_whole <- readr_ebv(ps_path = qzwslrm_example_solani("whole"), ps_format = "table",
                           pn_ebv_col_idx = 4)
#> 
#> ── Column specification ────────────────────────────────────────────────────────
#> cols(
#>   X1 = col_double(),
#>   X2 = col_double(),
#>   X3 = col_double(),
#>   X4 = col_double(),
#>   X5 = col_logical()
#> )
#> Warning: 1151 parsing failures.
#> row col  expected    actual                                                                             file
#>   5  -- 5 columns 4 columns '/tmp/RtmpQ6Sl2w/temp_libpath1e0d2c67f2/qzwslrm/extdata/mix99/whole_data/Solani'
#>   7  -- 5 columns 4 columns '/tmp/RtmpQ6Sl2w/temp_libpath1e0d2c67f2/qzwslrm/extdata/mix99/whole_data/Solani'
#>   8  -- 5 columns 4 columns '/tmp/RtmpQ6Sl2w/temp_libpath1e0d2c67f2/qzwslrm/extdata/mix99/whole_data/Solani'
#>   9  -- 5 columns 4 columns '/tmp/RtmpQ6Sl2w/temp_libpath1e0d2c67f2/qzwslrm/extdata/mix99/whole_data/Solani'
#>  14  -- 5 columns 4 columns '/tmp/RtmpQ6Sl2w/temp_libpath1e0d2c67f2/qzwslrm/extdata/mix99/whole_data/Solani'
#> ... ... ......... ......... ................................................................................
#> See problems(...) for more details.
tbl_ebv_partial <- readr_ebv(ps_path = qzwslrm_example_solani("partial"), ps_format = "table",
                             pn_ebv_col_idx = 4)
#> 
#> ── Column specification ────────────────────────────────────────────────────────
#> cols(
#>   X1 = col_double(),
#>   X2 = col_double(),
#>   X3 = col_double(),
#>   X4 = col_double(),
#>   X5 = col_logical()
#> )
#> Warning: 1156 parsing failures.
#> row col  expected    actual                                                                               file
#>   5  -- 5 columns 4 columns '/tmp/RtmpQ6Sl2w/temp_libpath1e0d2c67f2/qzwslrm/extdata/mix99/partial_data/Solani'
#>   7  -- 5 columns 4 columns '/tmp/RtmpQ6Sl2w/temp_libpath1e0d2c67f2/qzwslrm/extdata/mix99/partial_data/Solani'
#>   8  -- 5 columns 4 columns '/tmp/RtmpQ6Sl2w/temp_libpath1e0d2c67f2/qzwslrm/extdata/mix99/partial_data/Solani'
#>   9  -- 5 columns 4 columns '/tmp/RtmpQ6Sl2w/temp_libpath1e0d2c67f2/qzwslrm/extdata/mix99/partial_data/Solani'
#>  14  -- 5 columns 4 columns '/tmp/RtmpQ6Sl2w/temp_libpath1e0d2c67f2/qzwslrm/extdata/mix99/partial_data/Solani'
#> ... ... ......... ......... ..................................................................................
#> See problems(...) for more details.
summary_lrm(l_val_result <- val_ebv_lrm(pvec_ebv_partial = tbl_ebv_partial$ebv,
                                        pvec_ebv_whole = tbl_ebv_whole$ebv))
#> 
#> Bias between partial and whole: 	-0.0061
#> Regression whole on partial: 		1.0377
#> Correlation whole and partial: 		0.9873
#> Regression partial on whole: 		0.9393